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API Docs / SMRUCC.genomics.Core / GeneTable

GeneTable

Full name SMRUCC.genomics.ComponentModel.Annotation.GeneTable Assembly SMRUCC.genomics.Core Members 7

The gene dump information from the NCBI genbank.

00 Remarks

(从GBK文件之中所导出来的一个基因对象的简要信息,尝试使用这个对象以csv表格的格式存储一个基因的所有的注释信息)

01 Syntax

SMRUCC.genomics.ComponentModel.Annotation.GeneTable

02 Properties

NameOverloadsSummary
locus_id 1 假若在GBK文件之中没有Locus_tag属性,则导出函数gbExportService.DumpEXPORT())会尝试使用GeneTable.ProteinId来替代
function 1 The gene product function description
GO 1 The Go term id list of current protein object
KO 1 The KEGG Ortholog feature
CDS 1 基因序列
replicon_accessionID 1 该蛋白质所位于的基因组的在NCBI之中的编号信息
COG 1 The COG feature

03 Members

property locus_id #
locus_id

假若在GBK文件之中没有Locus_tag属性,则导出函数gbExportService.DumpEXPORT()会尝试使用GeneTable.ProteinId来替代

property function #
function

The gene product function description

property GO #
GO

The Go term id list of current protein object

property KO #
KO

The KEGG Ortholog feature

property CDS #
CDS

基因序列

property replicon_accessionID #
replicon_accessionID

该蛋白质所位于的基因组的在NCBI之中的编号信息

Remarks

the sequence id of the target genome(replicon).

property COG #
COG

The COG feature