TaxonomyExtensions

Full name SMRUCC.genomics.Metagenomics.TaxonomyExtensions Assembly SMRUCC.genomics.Core Members 4

01 Syntax

SMRUCC.genomics.Metagenomics.TaxonomyExtensions

02 Methods

Name	Overloads	Summary
Trim	1	Removes the NA/unknown/unclassified from the tails ranks of tax.
TaxonomyRankEmpty	1	判断当前的这个rank字符串所代表的物种分类名称是否是空的？？
SelectByTaxonomyRange	1
TaxonomyLineage	1

03 Members

method Trim #

Removes the NA/unknown/unclassified from the tails ranks of tax.

Parameters

Name	Type	Description
`tax`	Taxonomy	-

method TaxonomyRankEmpty #

TaxonomyRankEmpty(String)

判断当前的这个rank字符串所代表的物种分类名称是否是空的？？

Parameters

Name	Type	Description
`rank`	`String`	-

method SelectByTaxonomyRange #

SelectByTaxonomyRange``2(IEnumerable(Of ``0), Taxonomy, TaxonomyProjector(Of ``0), Projector(Of ``0, ``1))

Type Parameters

Name	Description
`T`
`TOut`

Parameters

Name	Type	Description
`seq`	IEnumerable(Of ``0)	-
`ref`	Taxonomy	如果目标getTaxonomy的分类结果是位于当前的这个参考ref范围内的，则会被筛选出来
`getTaxonomy`	TaxonomyProjector(Of ``0)	-
`getValue`	Projector(Of ``0, ``1)	-

method TaxonomyLineage #

TaxonomyLineage(ITaxonomyLineage)