nuget
The definition for the mass environment for run the simulation
Definition
00 Remarks
因为物质编号可能会来自于不同的数据库，所以会需要使用这个对象将一些关键的物质映射为计算引擎所能够被识别的对象
01 Syntax
SMRUCC.genomics.GCModeller.ModellingEngine.BootstrapLoader.Definitions.Definition
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| MetaCyc | 1 | |
| KEGG | 1 | Get the KEGG compound Definition |
| GetInfinitySource | 1 | |
| GenericEnumerator | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| ATP | 1 | |
| Water | 1 | |
| NucleicAcid | 1 | nucleotide metabolite id mapping for construct of the RNA molecule in the transcription process. |
| AminoAcid | 1 | amino acid metabolite id mapping for construct of the polypeptide in translation process |
| GenericCompounds | 1 | define the id mapping to some general compounds |
| CultureMedium | 1 | the compartment id of the Culture medium |
| status | 1 | define of the cell initial status. |
| ADP | 1 | |
| PPI | 1 | |
| PI | 1 | |
| GTP | 1 | |
| GDP | 1 | |
| Oxygen | 1 | |
| Ammonia | 1 | |
| transmembrane | 1 |
04 Members
MetaCyc(
IEnumerable(Of String), Double)Parameters
| Name | Type | Description |
|---|---|---|
allCompounds | IEnumerable(Of String) | - |
initMass | Double | NaN for random value |
KEGG(
IEnumerable(Of String), Double)Get the KEGG compound Definition
Parameters
| Name | Type | Description |
|---|---|---|
initMass | IEnumerable(Of String) | NaN for random value |
ATP
Water
NucleicAcid
nucleotide metabolite id mapping for construct of the RNA molecule in the transcription process.
AminoAcid
amino acid metabolite id mapping for construct of the polypeptide in translation process
GenericCompounds
define the id mapping to some general compounds
CultureMedium
the compartment id of the Culture medium
status
define of the cell initial status.
Returns
[cell_id => [metabolite => content data]]
ADP
PPI
PI
GTP
GDP
Oxygen
Ammonia
transmembrane
GetInfinitySource()
GenericEnumerator()