nuget
Parser
01 Syntax
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| ParsingSizeAuto | 1 | The parser worker will be select automatically based on the blast output file size. |
| UltraLarge | 1 | 判断文件的大小是否是输入超大的文件类型的 |
| isUltraLargeFileSize | 1 | 单条字符串的最大长度好像只有700MB的内存左右 |
| LoadBlastOutput | 1 | Load the blast output from a local file, if the exceptions happened during the data loading process, then a null value will be return. |
| TryParse | 1 | Log file size smaller than 512MB is recommended using this loading method, if the log file size is large than 512MB, please using the method Parser.TryParseUltraLarge()). |
| IsBlastOut | 1 | 判断目标文件是否为一个blast+的原始输出的结果文件 |
| GetType | 1 | The target blast output text file is from the blastp or blastn? |
| TryParseBlastnOutput | 1 | Load the blastn output data.(读取blastn日志输出的数据.) |
| Transform | 2 | File processor for the file size which is greater than 10GB. |
| measureParser | 1 | 获取blastn或者blastp的解析器 |
| __tryParseUltraLarge | 1 | Dealing with the file size large than 2GB. |
| TryParseUltraLarge | 1 | Dealing with the file size large than 2GB.(当Blast日志文件的大小大于100M的时候，可以使用这个方法进行加载，函数会自动判断日志是否为blastn还是blastp) |
| ParseDbName | 1 | |
| BuildGrepScript | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| DefaultEncoding | 1 |
04 Fields
| Name | Overloads | Summary |
|---|---|---|
| CHUNK_SIZE | 1 | It seems 768MB possibly is the up bound of the Utf8.GetString function. |
05 Members
String, Encoding)The parser worker will be select automatically based on the blast output file size. (当blast的输出文件非常大的时候，会自动选择分片段解析读取的方法工作)
| Name | Type | Description |
|---|---|---|
path | String | - |
encoding | Encoding | - |
String)判断文件的大小是否是输入超大的文件类型的
| Name | Type | Description |
|---|---|---|
path | String | - |
String)单条字符串的最大长度好像只有700MB的内存左右
String)Load the blast output from a local file, if the exceptions happened during the data loading process, then a null value will be return. (读取blast日志文件，当发生错误的时候，函数返回空值)
| Name | Type | Description |
|---|---|---|
path | String | The file path of the blast output |
String, Encoding)Log file size smaller than 512MB is recommended using this loading method, if the log file size is large than 512MB, please using the method Parser.TryParseUltraLarge(). (当blast输出的日志文件比较小的时候，可以使用当前的这个方法进行读取)
| Name | Type | Description |
|---|---|---|
Path | String | Original plant text file path of the blast output file. |
String)判断目标文件是否为一个blast+的原始输出的结果文件
| Name | Type | Description |
|---|---|---|
path$ | String | - |
String, Encoding)The target blast output text file is from the blastp or blastn?
| Name | Type | Description |
|---|---|---|
path | String | - |
Encoding | Encoding | - |
String)Load the blastn output data.(读取blastn日志输出的数据.)
| Name | Type | Description |
|---|---|---|
Path | String | The blastn output file path. |
Value(Of String), Int64, Action(Of Query), Encoding, ValueTuple(Of String, String))File processor for the file size which is greater than 10GB. (处理非常大的blast输出文件的时候所需要的，大小大于10GB的文件建议使用这个方法处理)
String, Int32, Action(Of Query()), Encoding, ValueTuple(Of String, String))处理非常大的blast输出文件的时候所需要的，大小大于10GB的文件建议使用这个方法处理
String)获取blastn或者blastp的解析器
| Name | Type | Description |
|---|---|---|
path | String | - |
String, Int64, Encoding)Dealing with the file size large than 2GB. (当Blast日志文件的大小大于100M的时候，可以使用这个方法进行加载，函数会自动判断日志是否为blastn还是blastp)
| Name | Type | Description |
|---|---|---|
path | String | File path of the blast output file. |
CHUNK_SIZE | Int64 | The parameter unit for this value is Byte, so you need to multiply the 1024*1024 to get a MB level value. It seems 768MB possibly is the up bound of the Utf8.GetString function. default is 64MB |
String, Int64, Encoding)Dealing with the file size large than 2GB.(当Blast日志文件的大小大于100M的时候，可以使用这个方法进行加载，函数会自动判断日志是否为blastn还是blastp)
| Name | Type | Description |
|---|---|---|
path | String | File path of the blast output file. |
CHUNK_SIZE | Int64 | The parameter unit for this value is Byte, so you need to multiply the 1024*1024 to get a MB level value. It seems 768MB possibly is the up bound of the Utf8.GetString function. default is 64MB |
It seems 768MB possibly is the up bound of the Utf8.GetString function.
String)String)