v228

Full name SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.v228 Assembly SMRUCC.genomics.Interops.NCBI.Extensions Members 12

2.2.28版本的BLAST+程序的日志输出文件

00 Remarks

默认的文件编码是Encoding.UTF8

01 Syntax

SMRUCC.genomics.Interops.NCBI.Extensions.LocalBLAST.BLASTOutput.BlastPlus.v228

02 Methods

Name	Overloads	Summary
ExportBestHit	1	从本日志文件之中导出BestHit表格(单项最佳的)
topHitResult	1	导出最佳的符合条件的
SBHLines	1	导出所有符合条件的
ExportOverview	1	不做任何筛选，导出所有的比对信息
ExportAllBestHist	1	Exports all of the hits which it meet the condition of threshold.(导出所有的单项最佳)
CheckIntegrity	1	根据Query检查完整性
Save	1
op_Implicit	1
Grep	1

03 Properties

Name	Overloads	Summary
Queries	1
ParameterSummary	1

04 Fields

Name	Overloads	Summary
tokenFirst	1	split name with default fasta header delimiters

05 Members

method ExportBestHit #

ExportBestHit(Double, Double)

从本日志文件之中导出BestHit表格(单项最佳的)

method topHitResult #

topHitResult(Query, Double, Double)

导出最佳的符合条件的

Parameters

Name	Type	Description
`query`	Query	-
`coverage`	`Double`	-
`identities`	`Double`	-

method SBHLines #

SBHLines(Query, Double, Double, TextGrepMethod, Boolean)

导出所有符合条件的

Parameters

Name	Type	Description
`Query`	Query	-
`coverage`	`Double`	-
`identities`	`Double`	-

method ExportOverview #

ExportOverview

不做任何筛选，导出所有的比对信息

method ExportAllBestHist #

ExportAllBestHist(Double, Double)

Exports all of the hits which it meet the condition of threshold.(导出所有的单项最佳)

method CheckIntegrity #

CheckIntegrity(FastaFile)

根据Query检查完整性

Parameters

Name	Type	Description
`source`	`FastaFile`	主要是使用到Query序列之中的Title属性

field tokenFirst #

tokenFirst

split name with default fasta header delimiters

property Queries #

Queries

property ParameterSummary #

ParameterSummary

method Save #

Save(String, Encoding)

method op_Implicit #

op_Implicit(String)

method Grep #

Grep(TextGrepMethod, TextGrepMethod)