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API Docs / SMRUCC.genomics.Visualize.Circos.Core / Histogram

Histogram

Full name SMRUCC.genomics.Visualize.Circos.Configurations.Nodes.Plots.Histogram Assembly SMRUCC.genomics.Visualize.Circos.Core Members 2

Histograms are a type Of track that displays 2D data, which associates a value With a genomic position. Line plots, scatter plots And heat maps are examples Of other 2D tracks.

The data format For 2D data Is

#chr start End value [options] ... hs3 196000000 197999999 71.0000 hs3 198000000 199999999 57.0000 hs4 0 1999999 28.0000 hs4 2000000 3999999 40.0000 hs4 4000000 5999999 59.0000 ...

Each histogram Is defined In a <plot> block within an enclosing <plots block.

00 Remarks

Like For links, rules are used To dynamically alter formatting Of Each data point (i.e. histogram bin). Here, I include the <rule> block from a file, which contains the following

01 Syntax

SMRUCC.genomics.Visualize.Circos.Configurations.Nodes.Plots.Histogram

02 Properties

NameOverloadsSummary
fill_color 1 Histograms can have both a fill And outline.
extend_bin 1 Do Not join histogram bins that Do Not abut.

03 Members

property fill_color #
fill_color

Histograms can have both a fill And outline. The Default outline Is 1px thick black.

property extend_bin #
extend_bin

Do Not join histogram bins that Do Not abut.