ModelAPI

Full name SMRUCC.genomics.Visualize.SyntenyVisualize.ComparativeGenomics.ModelAPI Assembly SMRUCC.genomics.Visualize.SyntenyVisualize Members 4

01 Syntax

SMRUCC.genomics.Visualize.SyntenyVisualize.ComparativeGenomics.ModelAPI

02 Methods

Name	Overloads	Summary
CreateObject	2	从PTT文档里面生成绘图模型
__COGsColor	1	假若COGsColor参数为空的话，就会根据PTT里面的注释生成颜色谱
CreateSyntenyGenome	1	通用的绘图模型的构建方法

03 Members

method CreateObject overload 2 #

CreateObject(GeneTable(), FastaSeq, Dictionary(Of String, Brush))

生成基因组的绘图模型

Parameters

Name	Type	Description
`anno`	`GeneTable()`	-
`nt`	`FastaSeq`	-
`COGsColor`	`Dictionary(Of String, Brush)`	假若这个参数为空，则函数会自动从基因之中所注释的COG分类自动生成颜色谱

method CreateObject #

CreateObject(PTT, Dictionary(Of String, Brush))

从PTT文档里面生成绘图模型

Parameters

Name	Type	Description
`PTT`	`PTT`	从NCBI的FTP服务器上面下载下来的PTT文档
`COGsColor`	`Dictionary(Of String, Brush)`	-

method __COGsColor #

__COGsColor``1(IEnumerable(Of ``0), Dictionary(Of String, Brush))

假若COGsColor参数为空的话，就会根据PTT里面的注释生成颜色谱

Type Parameters

Name	Description
`T`

Parameters

Name	Type	Description
`anno`	IEnumerable(Of ``0)	-
`COGsColor`	`Dictionary(Of String, Brush)`	-

method CreateSyntenyGenome #

CreateSyntenyGenome(GeneBrief(), Int32, String, GetDrawingID, Boolean, ICOGsBrush, Location)

通用的绘图模型的构建方法

Parameters

Name	Type	Description
`genes`	`GeneBrief()`	-
`len`	`Int32`	-
`title`	`String`	-
`COGsColor`	GetDrawingID	-
`getId`	`Boolean`	Public Delegate Function GetDrawingID(Gene As `GeneBrief`) As `String`
`region`	ICOGsBrush	Region of a gene cluster in a large genome.