nuget
User analysis object. Stores input compounds and enrichment results. Equivalent to the FELLA.USER S4 class in the R package.
FellaUser
01 Syntax
SMRUCC.genomics.Analysis.HTS.FELLA.Core.FellaUser
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| DefineCompounds | 1 | Define input compounds and background. |
| GetResult | 1 | Get the result for a specific method. |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| InputCompounds | 1 | Input compound KEGG IDs that were successfully mapped |
| ExcludedCompounds | 1 | Input compound KEGG IDs that could not be mapped |
| BackgroundCompounds | 1 | Background compound KEGG IDs (defaults to all compounds in graph) |
| HypergeomResult | 1 | Results from hypergeometric test |
| DiffusionResult | 1 | Results from diffusion analysis |
| PagerankResult | 1 | Results from PageRank analysis |
| HasValidInput | 1 | Check if any compounds were successfully mapped. |
04 Members
DefineCompounds(
IEnumerable(Of String), FellaData)Define input compounds and background. Maps input compound IDs to the graph and identifies excluded compounds.
GetResult(EnrichmentMethod)
Get the result for a specific method.
InputCompounds
Input compound KEGG IDs that were successfully mapped
ExcludedCompounds
Input compound KEGG IDs that could not be mapped
BackgroundCompounds
Background compound KEGG IDs (defaults to all compounds in graph)
HypergeomResult
Results from hypergeometric test
DiffusionResult
Results from diffusion analysis
PagerankResult
Results from PageRank analysis
HasValidInput
Check if any compounds were successfully mapped.