API Docs / SMRUCC.genomics.Analysis.HTS.FELLA
SMRUCC.genomics.Analysis.HTS.FELLA 1.0.9762.7562.
Namespaces 3
Types 19
Members 162
01 Namespaces
SMRUCC.genomics.Analysis.HTS.FELLA.Core
| Type | Summary |
Members |
|---|
| ApproximationMethod |
Approximation method for p-value computation. |
4 |
| BuildGraph |
Build KEGG graph from data sources. |
3 |
| Enrich |
Main enrichment wrapper. |
2 |
| EnrichmentMethod |
Enrichment method type. |
3 |
| EnrichmentResult |
Results from a single enrichment method. |
7 |
| ExportResults |
Export and format FELLA analysis results. |
6 |
| FellaData |
Precomputed database for FELLA analysis. |
16 |
| FellaUser |
User analysis object. Stores input compounds and enrichment results. Equivalent to the FELLA.USER S4 class in the R package. |
9 |
| KeggEdge |
Represents a directed edge in the KEGG graph. |
4 |
| KeggGraph |
The KEGG multi-layer heterogeneous graph. |
20 |
| KeggNode |
Represents a single node in the KEGG graph. |
5 |
| KeggNodeType |
Types of nodes in the KEGG hierarchical graph. |
5 |
| NodeResult |
Result for a single node from enrichment analysis. |
9 |
| RunDiffusion |
Network diffusion analysis for FELLA. |
4 |
| RunHypergeom |
Hypergeometric over-representation analysis. |
1 |
| RunPagerank |
Personalized PageRank analysis for FELLA. |
3 |
SMRUCC.genomics.Analysis.HTS.FELLA.Core.FellaData
SMRUCC.genomics.Analysis.HTS.FELLA.Math
| Type | Summary |
Members |
|---|
| Matrix |
Dense matrix class with basic linear algebra operations. |
30 |
| Statistics |
Statistical utility functions required for FELLA enrichment analysis. |
28 |
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