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API Docs / SMRUCC.genomics.Core / Gene

Gene

Full name SMRUCC.genomics.Assembly.MetaCyc.File.DataFiles.Slots.Gene Assembly SMRUCC.genomics.Core Members 14

01 Syntax

SMRUCC.genomics.Assembly.MetaCyc.File.DataFiles.Slots.Gene

02 Methods

NameOverloadsSummary
ToString 1

03 Properties

NameOverloadsSummary
LeftEndPosition 1 These slots encode the position of the left and right ends of the gene on the chromosome or plasmid on which the gene resides.
RightEndPosition 1 These slots encode the position of the left and right ends of the gene on the chromosome or plasmid on which the gene resides.
CentisomePosition 1 This slot lists the map position of this gene on the chromosome in centisome units (percentage length of the chromosome).
TranscriptionDirection 1 This slot specifies the direction along the chromosome in which this gene is transcribed; allowable values are "+" and "-".
Product 1 This slot holds the ID of a polypeptide or tRNA frame, which is the product of this gene.
Interrupted 1 If True, indicates that the specified gene is interrupted, that is, has a premature stop codon.
Accession1 1 The unique identifier of this gene object in the NCBI genbak database.
ComponentOf 1
InParalogousGeneGroup 1
LastUpdate 1
ProductString 1
Accession2 1
Table 1

04 Members

property LeftEndPosition #
LeftEndPosition

These slots encode the position of the left and right ends of the gene on the chromosome or plasmid on which the gene resides. "Left" means the end of the gene toward the coordinate-system origin (0). Therefore, the Left-End-Position is always less than the Right-End-Position.

property RightEndPosition #
RightEndPosition

These slots encode the position of the left and right ends of the gene on the chromosome or plasmid on which the gene resides. "Left" means the end of the gene toward the coordinate-system origin (0). Therefore, the Left-End-Position is always less than the Right-End-Position.

property CentisomePosition #
CentisomePosition

This slot lists the map position of this gene on the chromosome in centisome units (percentage length of the chromosome). The centisome-position values are computed automatically by Pathway Tools from the Left-End-Position slot. The value is a number between 0 and 100, inclusive.

property TranscriptionDirection #
TranscriptionDirection

This slot specifies the direction along the chromosome in which this gene is transcribed; allowable values are "+" and "-".

property Product #
Product

This slot holds the ID of a polypeptide or tRNA frame, which is the product of this gene. This slot may contain multiple values for two possible reasons: a given gene might be translated from more than one start codon, giving rise to products of different lengths; the product of the gene may undergo chemical modification. In the latter case, the gene lists all modified forms of the protein in its Product slot.(对于MetaCyc数据库而言,本属性 值包含有所有类型的蛋白质对象的UniqueID,但是在编译后的计算机模型之中,仅包含有不同启动子而形成 的所有不同长度的多肽链)

property Interrupted #
Interrupted

If True, indicates that the specified gene is interrupted, that is, has a premature stop codon.

property Accession1 #
Accession1

The unique identifier of this gene object in the NCBI genbak database. (本基因对象在NCBI Genbak数据库之中的唯一标识符)

property ComponentOf #
ComponentOf
property InParalogousGeneGroup #
InParalogousGeneGroup
property LastUpdate #
LastUpdate
property ProductString #
ProductString
property Accession2 #
Accession2
property Table #
Table
method ToString #
ToString()