OrthoGroupsHelper

Full name SMRUCC.genomics.Analysis.PanGenome.OrthoGroupsHelper Assembly SMRUCC.genomics.Analysis.PanGenome Members 2

01 Syntax

SMRUCC.genomics.Analysis.PanGenome.OrthoGroupsHelper

02 Methods

Name	Overloads	Summary
SetReferenceBHR	1	将基因组vs参考库的BHR直系同源结果放入到基因簇构建模块之中
BuildHomologyRelations	1	处理基因组比对数据，生成两两同源关系

03 Members

method SetReferenceBHR #

SetReferenceBHR(UnionFind, BiDirectionalBesthit())

将基因组vs参考库的BHR直系同源结果放入到基因簇构建模块之中

Parameters

Name	Type	Description
`uf`	UnionFind	-
`bhr`	`BiDirectionalBesthit()`	query为待分析的基因组内的基因ID，hit为参考库中的基因ID

method BuildHomologyRelations #

BuildHomologyRelations``1(Dictionary(Of String, ``0()))

处理基因组比对数据，生成两两同源关系