MotifSeeds

Full name SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Motif.MotifSeeds Assembly SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.MotifFinder Members 1

01 Syntax

SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Motif.MotifSeeds

02 Methods

Name	Overloads	Summary
LocalSeeding	1	create seeds via pairwise alignment, use the smith-waterman HSP as motif seeds.

03 Members

method LocalSeeding #

LocalSeeding(IEnumerable(Of FastaSeq), FastaSeq, PopulatorParameter)

create seeds via pairwise alignment, use the smith-waterman HSP as motif seeds.

Parameters

Name	Type	Description
`regions`	`IEnumerable(Of FastaSeq)`	-
`q`	`FastaSeq`	-
`param`	PopulatorParameter	-