nuget
The pfam fasta database title parser
SMRUCC.genomics.Data.Xfam.Pfam 1.0.9753.40023.
01 Namespaces
SMRUCC.genomics.Data.Xfam.Pfam
| Type | Summary | Members |
|---|---|---|
| DomainAnalysis | 6 |
SMRUCC.genomics.Data.Xfam.Pfam.PfamString
| Type | Summary | Members |
|---|---|---|
| API | 3 | |
| DomainObject | 这个数据结构是对ChouFasman结构而言的 | 1 |
| PfamString | This data object specific for a protein function protein domain structure. | 8 |
SMRUCC.genomics.Data.Xfam.Pfam.Pipeline.Database
| Type | Summary | Members |
|---|---|---|
| Alignment | 0 | |
| Comment | The comment section contains functional information about the Pfam family. | 0 |
| Entry | Pfam Entry, The format of Pfam entries has become stricter and we now enforce some ordering of the fields. | 0 |
| Header | The header section mainly contains compulsory fields. | 0 |
| PfamEntryHeader | Pfam title model | 7 |
| PfamFasta | 用于解析和表示pfam的fasta序列库中的蛋白结构域序列的数据模型 | 0 |
| Reference | The reference section mainly contains cross-links to other databases, and literature references. | 0 |
SMRUCC.genomics.Data.Xfam.Pfam.Pipeline.LocalBlast
The localblast based annotation pipeline.
| Type | Summary | Members |
|---|---|---|
| Annotation | 6 | |
| BlastOutputParser | 2 | |
| PfamHit | A hit model of pfam domain annotation on query protein sequence. | 3 |
SMRUCC.genomics.Data.Xfam.Pfam.ProteinDomainArchitecture.MPAlignment
| Type | Summary | Members |
|---|---|---|
| Algorithm | Tools for comparing the protein domain structure similarity. | 7 |
| AlignmentOutput | Protein Domain Alignment result.(蛋白质结构域的比对结果输出，从AlignmentOutput.ToString()函数生成文本文件格式的比对报告) | 9 |
| DomainDistribution | Domain position specifc distributions | 3 |
| DomainEquals | 3 | |
| LevAlign | 这个比对是做结构域对其的 | 9 |
| MotifParallelAlignment | 从双向比对结果之中根据PfamString结果来取等价的蛋白质 | 6 |
| MPCsvArchive | CSV格式的MPAlignment结果数据记录 | 4 |
SMRUCC.genomics.Data.Xfam.Pfam.SiteSearch
| Type | Summary | Members |
|---|---|---|
| PfamFamily | ftp://ftp.ebi.ac.uk/pub/databases/Pfam/sitesearch/PfamFamily.xml.gz | 4 |