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API Docs / SMRUCC.genomics.Interops.NBCR.MEME_Suite.Documents

SMRUCC.genomics.Interops.NBCR.MEME_Suite.Documents 1.0.9753.40023.

Namespaces 10 Types 33 Members 244

01 Namespaces

SMRUCC.genomics.Interops.NBCR.MEME_Suite

TypeSummary Members
Extensions 3
MemeWriter 4
ModuleMotif 相当于Regulon信息 11
ProbabilityExtensions 扩展方法模块 1

SMRUCC.genomics.Interops.NBCR.MEME_Suite.ComponentModel

TypeSummary Members
MotifPM Motif序列之中的一个位点 7
MotifSite Motif的Csv文件输出格式之1 6

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.MAST.HTML

TypeSummary Members
DocumentParser 5
HtmlParser 2

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.MEME.HTML

TypeSummary Members
MEMEHtml 3
MEMEOutput 经过匹配MEME结果和MAST结果之后得到的一条Motif记录 8
Motif 10
ParserAPI 3
SiteInfo 向某一个目标Motif所做出贡献的序列对象 5

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.MEME.LDM

TypeSummary Members
Motif Motif data from the text format output file of the meme program. 10
Site 生成Motif位点的序列 6

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.MEME.Text

TypeSummary Members
MEME_TEXT MEME - Motif discovery tool 9
SiteLength 解析输入的位点的原始序列的长度可能会比较麻烦 0

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.TomTOM

TypeSummary Members
TOMText 12

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.XmlOutput.MAST

TypeSummary Members
Correlation for n > 1 motifs there should be (n * (n - 1)) / 2 correlations, obviously there are none for only 1 motif 3
DbProperty the database tags are expected to be ordered in file specification order 9
HitResult gap, while superfluous, makes creating motif diagrams for the text version much easier when using XSLT 11
MAST mast.xml 8
Motif 9
MotifSite 8
Score 3
Segment within each seg the hit tags are expected to be ordered by pos ascending and then forward strand first 5
SequenceDescript the sequence tags are expected to be ordered by best combined p-value (of contained score tags) ascending 10
SequenceList 4

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.XmlOutput.MEME

TypeSummary Members
MEMEXml <MEME version="4.10.2" release="Thu Sep 03 15:00:54 2015 -0700">. 7
Model Model elements 28
Motif Motif elements 18
TrainingSet Training-set elements 8

SMRUCC.genomics.Interops.NBCR.MEME_Suite.DocumentFormat.XmlOutput.MEME.Motif

TypeSummary Members
ContributingSite 8