nuget
A Condition keeps track of the RNA-seq data in each replicate experiment for a given condition.
Condition
01 Syntax
SMRUCC.genomics.SequenceModel.RNA_Seq.Rockhopper.Core.Condition
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| .ctor | 1 | Constructs an empty Condition. |
| GetReplicate | 1 | Return the Replicate at the specified index. |
| AddReplicate | 1 | Adds a replicate to this Condition. |
| NumReplicates | 1 | Return the number of Replicates performed for this Condition. |
| SetMinDiffExpressionLevel | 1 | The background probability decreases as the number of reads increases. |
| ToString | 1 | Returns a String representation of this object. |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| Name | 1 | 条件名称 / 标签。 |
| Partner | 1 | If there are no replicates, index of most similar other condition. |
| MinDiffExpressionLevel | 1 | Used for differentially expressed p-value correction. |
| ReplicateList | 1 | 全部重复（只读）。 |
| AvgUpperQuartile | 1 | Set the average upper quartile gene expression over all replicates in all conditions. |
04 Fields
| Name | Overloads | Summary |
|---|---|---|
| _avgUpperQuartile | 1 | Avg upper quartile over all replicates in all conditions. |
05 Members
#ctor
Constructs an empty Condition.
GetReplicate(
Int32)Return the Replicate at the specified index.
AddReplicate(Replicate)
Adds a replicate to this Condition.
NumReplicates
Return the number of Replicates performed for this Condition.
SetMinDiffExpressionLevel
The background probability decreases as the number of reads increases. We use this fact to estimate a minimum level of expression necessary for us to be able to compute a p-value of differential expression. Currently, the expression threshold is set (based on anecdote and experience) to 0.005.
ToString
Returns a String representation of this object.
Name
条件名称 / 标签。
Partner
If there are no replicates, index of most similar other condition.
MinDiffExpressionLevel
Used for differentially expressed p-value correction.
ReplicateList
全部重复（只读）。
AvgUpperQuartile
Set the average upper quartile gene expression over all replicates in all conditions.
_avgUpperQuartile
Avg upper quartile over all replicates in all conditions.