nuget
Background nucleotide frequency model used for log-odds scoring and null-distribution construction.
BackgroundModel
01 Syntax
SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.BackgroundModel
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| Frequency | 1 | Frequency of a base; 0 for unknown characters. |
| Uniform | 1 | Build a uniform background (A=C=G=T=0.25). |
| FromSequence | 1 | Build a background from a sequence's nucleotide composition. |
| Validate | 1 |
03 Properties
04 Members
Frequency(
Char)Frequency of a base; 0 for unknown characters.
Uniform
Build a uniform background (A=C=G=T=0.25).
FromSequence(
String)Build a background from a sequence's nucleotide composition.
A
C
G
T
Validate()