nuget
motif model sequence site matches result
MotifMatch
00 Remarks
A single TFBS match found by scanning a sequence with a motif PWM.
01 Syntax
SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.MotifMatch
02 Methods
| Name | Overloads | Summary |
|---|---|---|
| ToString | 1 |
03 Properties
| Name | Overloads | Summary |
|---|---|---|
| segment | 1 | the motif matched site sequence The matched sequence fragment, read 5'->3' on the strand it was found (i.e. |
| strand | 1 | Strand: '+' for forward, '-' for reverse complement. |
| pvalue | 1 | P-value under the null (background) model: P(random background window scores >= observed score). |
| title | 1 | |
| identities | 1 | |
| score1 | 1 | |
| score2 | 1 | |
| motif | 1 | |
| start | 1 | |
| ends | 1 | |
| seeds | 1 |
04 Members
segment
the motif matched site sequence
The matched sequence fragment, read 5'->3' on the strand it was found (i.e. reverse-complemented for '-' strand matches).
strand
Strand: '+' for forward, '-' for reverse complement.
pvalue
P-value under the null (background) model: P(random background window scores >= observed score).
title
identities
score1
score2
motif
start
ends
seeds
ToString()