Extensions

Full name SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Extensions Assembly SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.MotifScanner Members 1

01 Syntax

SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.Extensions

02 Methods

Name	Overloads	Summary
ScanSites	1

03 Members

method ScanSites #

ScanSites(PWMDatabase, IEnumerable(Of FastaSeq), Int32, Double, Double, Int32, Int32, Boolean, Action(Of String))

Parameters

Name	Type	Description
`db`	PWMDatabase	-
`regions`	`IEnumerable(Of FastaSeq)`	-
`n_threads`	`Int32`	-
`identities_cutoff`	`Double`	-
`minW`	`Double`	-
`top`	`Int32`	-
`permutation`	`Int32`	-
`workflowMode`	`Boolean`	parallel will works in different mode
`progress`	`Action(Of String)`	-