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SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.MotifScanner 1.0.9762.7562.
01 Namespaces
SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns
| Type | Summary | Members |
|---|---|---|
| BackgroundModel | Background nucleotide frequency model used for log-odds scoring and null-distribution construction. | 8 |
| Extensions | 1 | |
| GeneReport | 8 | |
| MotifMatch | motif model sequence site matches result | 12 |
| MotifScanner | Scans biological sequences with motif PWMs to identify candidate TFBS loci. | 16 |
| PatternScanner | 对位点进行类似于正则表达式的模式匹配 | 1 |
| ProbabilityScanner | 3 | |
| PWMDatabase | PWM database with internal virtual file system | 3 |
| ScoreDistribution | Discretized probability distribution of the log-odds score under the null (background) model. | 8 |
| SequenceMotif | motif model | 3 |
| SmithWaterman | 1 |