ProbabilityScanner

Full name SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.ProbabilityScanner Assembly SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.MotifScanner Members 3

01 Syntax

SMRUCC.genomics.Analysis.SequenceTools.SequencePatterns.ProbabilityScanner

02 Methods

Name	Overloads	Summary
ScanSites	3	基于PWM的概率匹配

03 Members

method ScanSites overload 3 #

ScanSites(SequenceMotif, FastaSeq, Double, Int32, Double, Double, Int32)

基于PWM的概率匹配

Parameters

Name	Type	Description
`target`	SequenceMotif	-
`cutoff#`	`FastaSeq`	-
`minW%`	`Double`	-

method ScanSites #

ScanSites(Probability, FastaSeq, Double, Double, Double, Double, Int32, Int32)

基于PWM的概率匹配

Parameters

Name	Type	Description
`target`	`Probability`	-
`cutoff#`	`FastaSeq`	-
`minW%`	`Double`	-

method ScanSites overload 2 #

ScanSites(Residue(), FastaSeq, Double, Int32, Double, Double, Int32, Int32)

基于PWM的概率匹配，从目标基因组序列中找到Motif位点用于建立调控关系

Parameters

Name	Type	Description
`PWM`	`Residue()`	PWM
`target`	`FastaSeq`	-
`cutoff`	`Double`	-
`minW`	`Int32`	-